publications ISI 2012
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Alvarenga, P., Palma, P., de Varennes, A., Cunha-Queda, A.C., 2012. A contribution towards the risk assessment of soils from the São Domingos Mine (Portugal): Chemical, microbial and ecotoxicological indicators. Environmental Pollution 161, 50-56.
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Azevedo, J.S., Lopes, B., Katsumiti, A., Braga, E.S., Roche, H., Ribeiro, C.A.O., Bebianno, M.J., 2012. Evidence of contamination by oil and oil products in the Santos-São Vicente estuary, São Paulo, Brazil. Brazilian Journal of Oceanography 60, 117-126.
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Brito, A.C., Brotas, V., Caetano, M., Coutinho, T.P., Bordalo, A.A., Icely, J., Neto, J.M., Serôdio, J., Moita, T., 2012a. Defining phytoplankton class boundaries in Portuguese transitional waters: An evaluation of the ecological quality status according to the Water Framework Directive. Ecological Indicators 19, 5-14.
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Brito, A.C., Fernandes, T.F., Newton, A., Facca, C., Tett, P., 2012b. Does microphytobenthos resuspension influence phytoplankton in shallow systems? A comparison through a Fourier series analysis. Estuarine, Coastal and Shelf Science 110, 77-84.
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Brito, A.C., Newton, A., Tett, P., Fernandes, T.F., 2012c. Changes in the yield of microphytobenthic chlorophyll from nutrients: Considering denitrification. Ecological Indicators 19, 226-230.
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Brito, A.C., Newton, A., Tett, P., Fernandes, T.F., 2012d. How will shallow coastal lagoons respond to climate change? A modelling investigation. Estuarine, Coastal and Shelf Science 112, 98-104.
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Brito, A.C., Quental, T., Coutinho, T.P., Branco, M.A.C., Falcão, M., Newton, A., Icely, J., Moita, T., 2012e. Phytoplankton dynamics in southern Portuguese coastal lagoons during a discontinuous period of 40 years: An overview. Estuarine, Coastal and Shelf Science 110, 147-156.
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Cañedo-Argüelles, M., Rieradevall, M., Farrés-Corell, R., Newton, A., 2012. Annual characterisation of four Mediterranean coastal lagoons subjected to intense human activity. Estuarine, Coastal and Shelf Science 114, 59-69.
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Carrasco, A.R., Ferreira, Ó., Matias, A., Freire, P., 2012a. Flood hazard assessment and management of fetch-limited coastal environments. Ocean & Coastal Management 65, 15-25.
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Carrasco, A.R., Ferreira, Ó., Matias, A., Freire, P., 2012b. Natural and human-induced coastal dynamics at a back-barrier beach. Geomorphology 159–160, 30-36.
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Carvalho Dill, A.M.M., Stigter, T.Y., Brito, R., Chícharo, M.A., Chícharo, L., 2014. The combined use of radio frequency-electromagnetic surveys and chemical and biological analyses to study the role of groundwater discharge into the Guadiana estuary. Ecohydrology 7, 291-300.
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Chícharo, M.A., Amaral, A., Faria, A., Morais, P., Mendes, C., Piló, D., Ben-Hamadou, R., Chícharo, L., 2012. Are tidal lagoons ecologically relevant to larval recruitment of small pelagic fish? An approach using nutritional condition and growth rate. Estuarine, Coastal and Shelf Science 112, 265-279.
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Connor, S.E., Araújo, J., van der Knaap, W.O., van Leeuwen, J.F.N., 2012. A long-term perspective on biomass burning in the Serra da Estrela, Portugal. Quaternary Science Reviews 55, 114-124.
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Correia, A., Ramos, A., Barros, F., G, G.S., Hammer, P., Morais, P., Cunha, R., Castilho, R., 2012. Population structure and connectivity of the European conger eel (Conger conger L.) across the Northeastern-Atlantic and Western-Mediterranean: integration of molecular and otolith multielemental data. Marine Biology 159.
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Cravo, A., Pereira, C., Gomes, T., Cardoso, C., Serafim, A., Almeida, C., Rocha, T., Lopes, B., Company, R., Medeiros, A., Norberto, R., Pereira, R., Araujo, O., Bebianno, M.J., 2012. A multibiomarker approach in the clam Ruditapes decussatus to assess the impact of pollution in the Ria Formosa lagoon, South Coast of Portugal. Marine Environmental Research 75, 23-34.
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Daverat, F., Morais, P., Dias, E., Babaluk, J., Martin, J., Eon, M., Fablet, R., Pécheyran, C., Antunes, C., 2012. Plasticity of European flounder life history patterns discloses alternatives to catadromy. Marine Ecology Progress Series 465, 267-280.
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Delgado, J., Boski, T., Nieto, J.M., Pereira, L., Moura, D., Gomes, A., Sousa, C., García-Tenorio, R., 2012a. Sea-level rise and anthropogenic activities recorded in the late Pleistocene/Holocene sedimentary infill of the Guadiana Estuary (SW Iberia). Quaternary Science Reviews 33, 121-141.
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Delgado, J., Pérez-López, R., Galván, L., Nieto, J.M., Boski, T., 2012b. Enrichment of rare earth elements as environmental tracers of contamination by acid mine drainage in salt marshes: A new perspective. Marine Pollution Bulletin 64, 1799-1808.
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Dias, E., Morais, P., Leopold, M., Campos, J., Antunes, C., 2012. Natural born indicators: Great cormorant Phalacrocorax carbo (Aves: Phalacrocoracidae) as monitors of river discharge influence on estuarine ichthyofauna. Journal of Sea Research 73, 101-108.
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Domingues, R.B., Barbosa, A.B., Sommer, U., Galvão, H.M., 2012. Phytoplankton composition, growth and production in the Guadiana estuary (SW Iberia): Unraveling changes induced after dam construction. Science of The Total Environment 416, 300-313.
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Esteves, F., Teixeira Santos, M., Eiras-Dias, J.E., Fonseca, F., 2012. Occurrence of grapevine leafroll-associated virus 5 in Portugal: genetic variability and population structure in field-grown grapevines. Archives of Virology 157, 1747-1765.
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Fernandes, P., Musgrave, J.A., Clayton, G., Pereira, Z., Oliveira, J.T., Goodhue, R., Rodrigues, B., 2012. New evidence concerning the thermal history of Devonian and Carboniferous rocks in the South Portuguese Zone. Journal of the Geological Society 169, 647-654.
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Fortes, C.J., Ferreira, Ó., Silva, P.A., Moura, T., Capitão, R., Amante, L., Vousdoukas, M., Bezerra, M., 2012. Joint use of data and modeling in coastal wave transformation. Journal of Coastal Conservation 16, 461-472.
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Gomes, T., Pereira, C.G., Cardoso, C., Pinheiro, J.P., Cancio, I., Bebianno, M.J., 2012. Accumulation and toxicity of copper oxide nanoparticles in the digestive gland of Mytilus galloprovincialis. Aquatic Toxicology 118–119, 72-79.
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Gonzalez-Rey, M., Bebianno, M.J., 2012. Does non-steroidal anti-inflammatory (NSAID) ibuprofen induce antioxidant stress and endocrine disruption in mussel Mytilus galloprovincialis? Environmental Toxicology and Pharmacology 33, 361-371.
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Guimarães, M.H.E., Mascarenhas, A., Sousa, C., Boski, T., Ponce Dentinho, T., 2012. The impact of water quality changes on the socio-economic system of the Guadiana Estuary: an assessment of management options. Ecology and Society 17.
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Janeiro, J., Martins, F., Relvas, P., 2012. Towards the development of an operational tool for oil spills management in the Algarve coast. Journal of Coastal Conservation 16, 449-460.
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Lima-Costa, M.E., Tavares, C., Raposo, S., Rodrigues, B., Peinado, J.M., 2012. Kinetics of sugars consumption and ethanol inhibition in carob pulp fermentation by Saccharomyces cerevisiae in batch and fed-batch cultures. Journal of Industrial Microbiology & Biotechnology 39, 789-797.
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Lopes, B., Ferreira, A.M., Bebianno, M.J., 2012. Responses of CYP450 dependent system to aliphatic and aromatic hydrocarbons body burden in transplanted mussels from South coast of Portugal. Ecotoxicology 21, 730-749.
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Loureiro, C., Ferreira, Ó., Cooper, J.A.G., 2012a. Extreme erosion on high-energy embayed beaches: Influence of megarips and storm grouping. Geomorphology 139–140, 155-171.
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Loureiro, C., Ferreira, Ó., Cooper, J.A.G., 2012b. Geologically constrained morphological variability and boundary effects on embayed beaches. Marine Geology 329–331, 1-15.
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Martins, V., Abrantes, I., Grangeia, C., Martins, P., Nagai, R., Sousa, S.H.M., Laut, L.L.M., Dias, J.M.A., Dias, J.M., da Silva, E.F., Rocha, F., 2012a. Records of sedimentary dynamics in the continental shelf and upper slope between Aveiro–Espinho (N Portugal). Journal of Marine Systems 96–97, 48-60.
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Martins, V., Figueira, R.C.L., França, E.J., Ferreira, P.A.d.L., Martins, P., Santos, J.F., Dias, J.A., Laut, L.L.M., Monge Soares, A.M., Silva, E.F.d., Rocha, F., 2012b. Sedimentary processes on the NW Iberian Continental Shelf since the Little Ice Age. Estuarine, Coastal and Shelf Science 102–103, 48-59.
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McClain, M.E., Chícharo, L., Fohrer, N., Gaviño Novillo, M., Windhorst, W., Zalewski, M., 2012. Training hydrologists to be ecohydrologists and play a leading role in environmental problem solving. Hydrol. Earth Syst. Sci. 16, 1685-1696.
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Mendes, I., Dias, J.A., Schönfeld, J., Ferreira, Ó., 2012a. Distribution of living benthic foraminifera on the Northern Gulf of Cadiz continental shelf. The Journal of Foraminiferal Research 42, 18-38.
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Mendes, I., Dias, J.A., Schönfeld, J., Ferreira, Ó., Rosa, F., Gonzalez, R., Lobo, F.J., 2012b. Natural and human-induced Holocene paleoenvironmental changes on the Guadiana shelf (northern Gulf of Cadiz). The Holocene 22, 1011-1024.
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Morais, P., 2012. Comments on Lowe et al. “Otolith Microchemistry Reveals Substantial Use of Freshwater by Southern Flounder in the Northern Gulf of Mexico”. Estuaries and Coasts 35, 904-906.
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Morais, P., Martins, F., Chícharo, M.A., Lopes, J., Chícharo, L., 2012. Merging anchovy eggs abundance into a hydrodynamic model as an assessment tool for estuarine ecohydrological management. River Research and Applications 28, 160-176.
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Moura, D., Gabriel, S., Gamito, S., Santos, R., Zugasti, E., Naylor, L., Gomes, A., Tavares, A.M., Martins, A.L., 2012. Integrated assessment of bioerosion, biocover and downwearing rates of carbonate rock shore platforms in southern Portugal. Continental Shelf Research 38, 79-88.
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Muha, T.P., Chíaro, L., Morais, P., Pereira, R., Ben-Hamadou, R., Cruz, J., Teodósio Chíaro, M.A., 2012. The effect of distinct hydrologic conditions on the zooplankton community in an estuary under mediterranean climate influence. Ecohydrology & Hydrobiology 12, 327-335.
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Newton, A., 2012. A Systems Approach for Sustainable Development in Coastal Zones. Ecology and Society 17.
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Newton, A., Carruthers, T.J.B., Icely, J., 2012. The coastal syndromes and hotspots on the coast. Estuarine, Coastal and Shelf Science 96, 39-47.
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Pacheco, A., FaÍSca, L., Almeida, L., Ferreira, Ó., Williams, J.J., Dias, J.A., 2012. A statistical evaluation of models for extrapolating current velocities from boast-mounted ADCP profiles. Coastal Engineering Journal 54, 1250018.
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Range, P., Piló, D., Ben-Hamadou, R., Chícharo, M.A., Matias, D., Joaquim, S., Oliveira, A.P., Chícharo, L., 2012. Seawater acidification by CO2 in a coastal lagoon environment: Effects on life history traits of juvenile mussels Mytilus galloprovincialis. Journal of Experimental Marine Biology and Ecology 424–425, 89-98.
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Raposo, S., Lima-Costa, M.E., 2012. Effects of the hydrodynamic environment and oxygen mass transfer on plant cell growth and milk-clotting protease production in a stirred-tank reactor. Engineering in Life Sciences 12, 441-449.
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Rodrigues, B., Matias, A., Ferreira, Ó., 2012. Overwash hazard assessment. Geologica Acta 10, 427-437.
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Sekovski, I., Newton, A., Dennison, W.C., 2012. Megacities in the coastal zone: Using a driver-pressure-state-impact-response framework to address complex environmental problems. Estuarine, Coastal and Shelf Science 96, 48-59.
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Serafim, A., Company, R., Lopes, B., Fonseca, V.F., França, S., Vasconcelos, R.P., Bebianno, M.J., Cabral, H.N., 2012a. Application of an integrated biomarker response index (IBR) to assess temporal variation of environmental quality in two Portuguese aquatic systems. Ecological Indicators 19, 215-225.
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Serafim, A., Company, R., Lopes, B., Mendes, N., Castela, E., Bebianno, M.J., 2012b. Profile analysis of mothers susceptible to contaminants exposure in the Algarve region: Application of the HJ-BIPLOT method. Biometrical Letters 49, 57-66.
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Serafim, A., Company, R., Lopes, B., Rosa, J., Cavaco, A., Castela, G., Castela, E., Olea, N., Bebianno, M.J., 2012c. Assessment of Essential and Nonessential Metals and Different Metal Exposure Biomarkers in the Human Placenta in a Population from the South of Portugal. Journal of Toxicology and Environmental Health, Part A 75, 867-877.
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Serrão, M., Rodrigues, J.M.F., Rodrigues, J.I., du Buf, J.M.H., 2012. Indoor Localization and Navigation for Blind Persons using Visual Landmarks and a GIS. Procedia Computer Science 14, 65-73.
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Silva, P.L., Martins, F., Boski, T., Sampath, R., 2012. Modeling Basin Infilling Processes in Estuaries using two different approaches: An Aggregate Diffusive Type Model and a Processed Based Model. Journal of Integrated Coastal Zone Management 12, 117-129.
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Teixeira, M.A.C., Argaín, J.L., Miranda, P.M.A., 2012. The importance of friction in mountain wave drag amplification by Scorer parameter resonance. Quarterly Journal of the Royal Meteorological Society 138, 1325-1337.
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Thompson, C.E.L., Williams, J.J., Metje, N., Coates, L.E., Pacheco, A., 2012. Turbulence based measurements of wave friction factors under irregular waves on a gravel bed. Coastal Engineering 63, 39-47.
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Vousdoukas, M.I., 2012. Erosion/accretion patterns and multiple beach cusp systems on a meso-tidal, steeply-sloping beach. Geomorphology 141–142, 34-46.
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Vousdoukas, M.I., Almeida, L.P.M., Ferreira, Ó., 2012a. Beach erosion and recovery during consecutive storms at a steep-sloping, meso-tidal beach. Earth Surface Processes and Landforms 37, 583-593.
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Vousdoukas, M.I., Ferreira, Ó., Almeida, L.P., Pacheco, A., 2012b. Toward reliable storm-hazard forecasts: XBeach calibration and its potential application in an operational early-warning system. Ocean Dynamics 62, 1001-1015.
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Vousdoukas, M.I., Wziatek, D., Almeida, L.P., 2012c. Coastal vulnerability assessment based on video wave run-up observations at a mesotidal, steep-sloped beach. Ocean Dynamics 62, 123-137.
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Whelan, J., Murphy, E., Pearson, A., Jeffers, P., Kieran, P., McDonnell, S., Glennon, B., 2012. Use of focussed beam reflectance measurement (FBRM) for monitoring changes in biomass concentration. Bioprocess and Biosystems Engineering 35, 963-975.
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Zibordi, G., Ruddick, K., Ansko, I., Moore, G., Kratzer, S., Icely, J., Reinart, A., 2012. In situ determination of the remote sensing reflectance: an inter-comparison. Ocean Sci. 8, 567-586.

